Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs62325145 chr4:154725687 G/C 9.98E-5 132 40.57 49.93 50.9 KM Plot
TGCT rs62325147 chr4:154727568 G/A 8.84E-5 134 40.57 42.1 50.9 KM Plot
TGCT rs62325148 chr4:154727993 A/G 8.84E-5 134 40.57 42.1 50.9 KM Plot
TGCT rs62325149 chr4:154728006 G/C 0.000108 134 40.57 46.02 45.1 KM Plot
TGCT rs62325150 chr4:154728117 T/G 0.000108 134 40.57 46.02 45.1 KM Plot
TGCT rs62325151 chr4:154730595 A/G 9.71E-5 133 40.57 43.28 50.9 KM Plot
TGCT rs62338061 chr5:1823579 G/A 5.89E-6 133 42.27 43.9 24.73 KM Plot
TGCT rs62338062 chr5:1824353 G/A 5.89E-6 133 42.27 43.9 24.73 KM Plot
TGCT rs62498222 chr8:20020347 C/A 3.48E-12 131 43.68 41.47 20.6 KM Plot
TGCT rs62498229 chr8:20029899 C/T 3.48E-12 132 42.27 41.47 20.6 KM Plot
TGCT rs62520590 chr8:124076215 T/C 6.29E-5 133 37.3 49.93 56.7 KM Plot
TGCT rs62520592 chr8:124080922 G/A 1.26E-6 130 37.3 50.45 56.7 KM Plot
TGCT rs62523038 chr8:103081266 G/A 0.000121 133 42.27 27.65 48.45 KM Plot
TGCT rs62523039 chr8:103082315 G/A 0.000121 133 42.18 28.27 48.45 KM Plot
TGCT rs626966 chr13:21846724 A/G 5.93E-7 132 46.3 36.7 14.42 KM Plot